DNA Binding Motif

						

			
Accessions: MA1351.1 (JASPAR 2024), M0198 (AthalianaCistrome v4_May2016)

			
Names: GBF3, GBF3.DAP, T08054;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ChIP-seq, DAP-seq
Length: 15
Consensus: TGCCACGTsasmwwh
Weblogo: 
PSSM: P0      A      C      G      T
01     36     92     39    429      T
02      2      1    532     61      G
03     84    512      0      0      C
04      0    596      0      0      C
05    596      0      0      0      A
06      0    593      3      0      C
07      3      2    591      0      G
08      0      0      0    596      T
09     50    374    170      2      s
10    392      0    134     70      a
11     36    166    251    143      s
12    161    394     12     29      m
13    304     72     39    181      w
14    187    114     67    228      w
15    169    169     54    204      h
Type: Heterodimer
Binding TFs: Q42510 (Sec7 domain, Guanine nucleotide exchange factor in Golgi transport N-terminal)
T08054 (bZIP transcription factor, Basic region leucine zipper, G-box binding protein MFMR)
Q42510
Binding Sites: MA1351.1.1
MA1351.1.12
MA1351.1.16 / MA1351.1.18
MA1351.1.14
MA1351.1.17
MA1351.1.15
MA1351.1.19
MA1351.1.2
MA1351.1.3
MA1351.1.4
MA1351.1.5
MA1351.1.7
MA1351.1.6
MA1351.1.8
MA1351.1.11
MA1351.1.10
MA1351.1.13
MA1351.1.20
MA1351.1.9
			
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.