DNA Binding Motif

						

			
Accessions: IRF3_methyl_1 (HT-SELEX2 May2017)

			
Names: IRF3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 22
Consensus: kCdGTTTCCwGGAAAcyrAaAc
Weblogo: 
PSSM: P0      A      C      G      T
01    235    455   8391   3589      k
02    170  12636     13   1888      C
03   3188     62   3997   5423      d
04   1046   3298  11444    564      G
05    455      1      1  12610      T
06    282      3      1  12670      T
07      1    526      0  12670      T
08      2  12670      2      9      C
09   1063  12586   1155    767      C
10   4741   2869     91   4969      w
11    272   2145  12519    661      G
12    238      1  12669     13      G
13  12665      0     22      2      A
14  12670      0      2     84      A
15  12605     34      2    340      A
16   2893  10927   2145    199      c
17   3029   6145   2007   4461      y
18   4673      1   9595      2      r
19  11374   2636   1458     35      A
20  10544   1873     40   3303      a
21  12477   1066     54   1356      A
22   2572   8694   3436   1034      c
Binding TFs: IRF3 (Interferon regulatory factor transcription factor)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.