DNA Binding Motif

						

			
Accessions: 1am9_AB (3D-footprint 20231221)

			
Names: PROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A)
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER
Length: 10
Consensus: gTCaCcCCaC
Weblogo: 
PSSM: P0      A      C      G      T
01     21     14     45     16      g
02      4      4      4     84      T
03      0     96      0      0      C
04     61     12     12     11      a
05      3     86      3      4      C
06      8     64      7     17      c
07      5     87      2      2      C
08      2     87      2      5      C
09     61     12     13     10      a
10      4     83      5      4      C
Type: Heterodimer
Binding TFs: 1am9_A (Helix-loop-helix DNA-binding domain)
1am9_B (Helix-loop-helix DNA-binding domain)
Binding Sites: 1am9_G
1am9_F
			
Publications: Párraga A, Bellsolell L, Ferré-D'Amaré A.R, Burley S.K. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure (London, England : 1993) 6:661-72 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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