DNA Binding Motif

						

			
Accessions: 1j1v_A (3D-footprint 20231221)

			
Names: Chromosomal replication initiator protein dnaA
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of DnaA domainIV complexed with DnaAbox DNA
Length: 7
Consensus: ATCCACA
Weblogo: 
PSSM: P0      A      C      G      T
01     67      9     11      9      A
02      0      0      0     96      T
03      9     69      9      9      C
04      0     86      1      9      C
05     96      0      0      0      A
06      9     78      9      0      C
07     96      0      0      0      A
Binding TFs: 1j1v_A (Bacterial dnaA protein helix-turn-helix)
Binding Sites: 1j1v_B
1j1v_C
			
Publications: Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, Katayama T, Yokoyama S. Structural basis of replication origin recognition by the DnaA protein. Nucleic acids research 31:2077-86 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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