DNA Binding Motif

						

			
Accessions: UP00484A_2 (UniPROBE 20160601)

			
Names: CBF1, GST-CSL_Fig4, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, recombination signal binding protein for immunoglobulin kappa J region, SUH
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: gvmsCGTGGGAAmywck
Weblogo: 
PSSM: P0      A      C      G      T
01   0.19   0.16   0.43   0.22      g
02   0.34   0.27   0.30   0.09      v
03   0.30   0.33   0.18   0.19      m
04   0.03   0.29   0.57   0.11      s
05   0.02   0.88   0.03   0.07      C
06   0.06   0.03   0.90      0      G
07      0   0.01      0   0.98      T
08      0      0   0.99      0      G
09   0.05      0   0.92   0.03      G
10   0.01      0   0.99      0      G
11   0.98      0   0.01   0.01      A
12   0.91   0.01   0.07      0      A
13   0.35   0.48   0.04   0.13      m
14   0.23   0.38   0.14   0.25      y
15   0.47   0.11   0.13   0.29      w
16   0.15   0.45   0.22   0.17      c
17   0.12   0.20   0.26   0.41      k
Binding TFs: UP00484A (IPT/TIG domain, Beta-trefoil DNA-binding domain, LAG1, DNA binding)
Binding Sites: GCGTGGGA
AATTCCCA
AGTGGGAA
AGTTCCCA
ATGGGAAA
ATGGGAAC
ATTCCCAC
CATGGGAA
CCGTGGGA
CCTGGGAA
CGTGAGAA
CGTGGGAG
CTTCCCAC
GGTGGGAA
GGTTCCCA
GTGGGAAA
GTGGGAAC
GTTTCCCA
TGGGAAAA
TGTGGGAA
			
Publications: Del Bianco C, Vedenko A, Choi SH, Berger MF, Shokri L, Bulyk ML, Blacklow SC. Notch and MAML-1 complexation do not detectably alter the DNA binding specificity of the transcription factor CSL. PLoS One : (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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