DNA Binding Motif

						

			
Accessions: MA1184.1 (JASPAR 2024), M0581 (AthalianaCistrome v4_May2016)

			
Names: RVE1, RVE1.DAP, T21141;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: aaawAAATATCTwa
Weblogo: 
PSSM: P0      A      C      G      T
01    234    117    106    143      a
02    203    147    101    149      a
03    237    124    142     97      a
04    332     42     58    168      w
05    526      0      0     74      A
06    600      0      0      0      A
07    586      5      4      5      A
08      4      0     10    586      T
09    600      0      0      0      A
10      0      0      0    600      T
11      0    600      0      0      C
12     85     42     12    461      T
13    205    103     77    215      w
14    254    130     87    129      a
Type: Heterodimer
Binding TFs: F4KGY6 / T21141 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
F4KGY6
Binding Sites: MA1184.1.1
MA1184.1.10
MA1184.1.11
MA1184.1.12
MA1184.1.13
MA1184.1.14
MA1184.1.15
MA1184.1.16
MA1184.1.17
MA1184.1.18
MA1184.1.19
MA1184.1.2
MA1184.1.20
MA1184.1.3
MA1184.1.4
MA1184.1.5
MA1184.1.6
MA1184.1.7
MA1184.1.8
MA1184.1.9
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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