DNA Binding Motif

						

			
Accessions: 4s05_A (3D-footprint 20231221)

			
Names: DNA-binding transcriptional regulator BasR
Organisms: Klebsiella pneumoniae JM45
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA box DNA
Length: 5
Consensus: TtAAt
Weblogo: 
PSSM: P0      A      C      G      T
01     11      8      8     69      T
02     18      0     17     61      t
03     96      0      0      0      A
04     96      0      0      0      A
05      8     17     19     52      t
Binding TFs: 4s05_A (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: 4s05_C
4s05_D
			
Publications: Lou YC, Weng TH, Li YC, Kao YF, Lin WF, Peng HL, Chou SH, Hsiao CD, Chen C. Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA. Nat Commun : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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