DNA Binding Motif

						

			
Accessions: M0723 (AthalianaCistrome v4_May2016)

			
Names: RAV1.ampDAP, T00471;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: tttymagrtdwwtTyTGTTGk
Weblogo: 
PSSM: P0      A      C      G      T
01    126    107    120    238      t
02    132     93     89    277      t
03    140    140     71    240      t
04    108    201     50    232      y
05    178    323     67     23      m
06    326      1    125    139      a
07     94     62    348     87      g
08    228     23    241     99      r
09     89     44     78    380      t
10    200     17    223    151      d
11    226     44    101    220      w
12    163     42     25    361      w
13    109     92     13    377      t
14     85     28     20    458      T
15    118    278     32    163      y
16      0      9      0    582      T
17      2      0    589      0      G
18     22     27      3    539      T
19      7     17     38    529      T
20     24     15    481     71      G
21     74    147    153    217      k
Binding TFs: T00471 (AP2 domain, B3 DNA binding domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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