DNA Binding Motif
| Accessions: | 2ayg_A (3D-footprint 20231221) |
| Names: | Regulatory protein E2 |
| Organisms: | Human papillomavirus type 6a |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA target |
| Length: | 6 |
| Consensus: | CGGTTG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7 73 7 9 C 02 0 0 96 0 G 03 0 0 96 0 G 04 7 7 7 75 T 05 9 7 7 73 T 06 9 7 73 7 G |
| Binding TFs: | 2ayg_A (E2 (early) protein, C terminal) |
| Binding Sites: | 2ayg_C / 2ayg_D |
| Publications: | Hooley E, Fairweather V, Clarke A.R, Gaston K, Brady R.L. The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic acids research 34:3897-908 (2006). [Pubmed] |
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