DNA Binding Motif

						

			
Accessions: 4cyc_A (3D-footprint 20231221)

			
Names: HOMEOTIC PROTEIN ULTRABITHORAX
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
Length: 4
Consensus: ATAa
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0      0      0     96      T
03     76      1     19      0      A
04     38     19     20     19      a
Binding TFs: 4cyc_A (Homeobox domain)
Binding Sites: 4cyc_C
4cyc_D
			
Publications: Foos N, Maurel-Zaffran C, Maté M.J, Vincentelli R, Hainaut M, Berenger H, Pradel J, Saurin A.J, Ortiz-Lombardía M, Graba Y. A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode. Structure (London, England : 1993) 23:270-9 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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