DNA Binding Motif
| Accessions: | MA1693.1 (JASPAR 2024) |
| Names: | ARF34 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | rrCAGACAGCmrg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 4678 2573 3827 3172 r 02 3908 3118 3747 3477 r 03 388 13025 544 293 C 04 11877 1396 585 392 A 05 363 174 13571 142 G 06 13106 391 622 131 A 07 146 13756 233 115 C 08 13693 172 181 204 A 09 1458 607 10249 1936 G 10 1230 11608 825 587 C 11 5728 3751 2708 2063 m 12 4406 3332 3589 2923 r 13 3224 3521 4418 3087 g |
| Type: | Heterodimer |
| Binding TFs: | A0A060D7X7 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) A0A060D7X7 |
| Binding Sites: | MA1693.1.1 MA1693.1.10 MA1693.1.11 / MA1693.1.8 MA1693.1.12 MA1693.1.13 / MA1693.1.9 MA1693.1.14 MA1693.1.10 / MA1693.1.15 MA1693.1.11 / MA1693.1.16 MA1693.1.17 MA1693.1.12 / MA1693.1.18 MA1693.1.19 MA1693.1.1 / MA1693.1.2 MA1693.1.13 / MA1693.1.20 MA1693.1.2 / MA1693.1.3 MA1693.1.3 / MA1693.1.4 MA1693.1.4 / MA1693.1.5 MA1693.1.5 / MA1693.1.6 MA1693.1.6 / MA1693.1.7 MA1693.1.7 / MA1693.1.8 MA1693.1.9 MA1693.1.14 MA1693.1.15 MA1693.1.16 MA1693.1.17 MA1693.1.18 MA1693.1.19 MA1693.1.20 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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