DNA Binding Motif

						

			
Accessions: MA2014.1 (JASPAR 2024)

			
Names: BAM8
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 14
Consensus: ytCACACGTGysaa
Weblogo: 
PSSM: P0      A      C      G      T
01    420    498    325    633      y
02    418    441    207    810      t
03    116   1278    279    203      C
04   1383    101    273    119      A
05      6   1856      4     10      C
06   1846      2     14     14      A
07      2   1862      1     11      C
08      9      1   1863      3      G
09      9     31      5   1831      T
10     66      1   1803      6      G
11    116   1018    140    602      y
12    320    500    863    193      s
13    803    222    409    442      a
14    600    371    456    449      a
Type: Heterodimer
Binding TFs: Q9FH80 (Glycosyl hydrolase family 14, Plant protein of unknown function (DUF822))
Q9FH80
Binding Sites: MA2014.1.5
MA2014.1.6
MA2014.1.3 / MA2014.1.4
MA2014.1.1
MA2014.1.10
MA2014.1.11
MA2014.1.12
MA2014.1.13
MA2014.1.14
MA2014.1.15
MA2014.1.16
MA2014.1.17
MA2014.1.18
MA2014.1.19
MA2014.1.2
MA2014.1.20
MA2014.1.7
MA2014.1.8
MA2014.1.9
			
Publications: Reinhold H, Soyk S, Simková K, Hostettler C, Marafino J, Mainiero S, Vaughan CK, Monroe JD, Zeeman SC. β-amylase-like proteins function as transcription factors in Arabidopsis, controlling shoot growth and development. Plant Cell 23:1391-403 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.