DNA Binding Motif
| Accessions: | UP00047A_2 (UniPROBE 20160601) |
| Names: | c-Krox, Kruppel-related zinc finger protein cKrox, MGC102577, T-helper-inducing POZ/Kruppel-like factor, Thpok, Vzinc finger and BTB domain containing 7B, Zbtb7b, Zfp-67, Zfp67, Zinc finger and BTB domain-containing protein 7B, Zinc finger protein 67, Zinc finger protein Th-POK |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | ywkrvGACCACCaktry |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.31 0.20 0.29 y 02 0.31 0.18 0.20 0.31 w 03 0.22 0.17 0.27 0.34 k 04 0.48 0.09 0.28 0.16 r 05 0.40 0.33 0.26 0.01 v 06 0 0.01 0.96 0.03 G 07 0.91 0.08 0 0.01 A 08 0.01 0.98 0 0.01 C 09 0.01 0.97 0.02 0.01 C 10 0.89 0.08 0 0.02 A 11 0.01 0.97 0 0.02 C 12 0.02 0.80 0.01 0.17 C 13 0.42 0.19 0.17 0.23 a 14 0.09 0.18 0.35 0.38 k 15 0.18 0.13 0.22 0.48 t 16 0.37 0.16 0.32 0.16 r 17 0.21 0.27 0.24 0.27 y |
| Binding TFs: | UP00047A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | AAGCCCCC ACCCCCCA AGACCCCC AGCCCCCT AGGGGGGG AGGGGGTC ATGGGGGG CCCCCCAA CCCCCCCA CCCCCCCC CCCCCCTC CGACCCCC CGCCCCCC CGGGGGGC CGGGGGTC GACCCCCA GACCCCCC GCCCCCCA GCCCCCCC GGACCCCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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