DNA Binding Motif

						

			
Accessions: 4hc7_B (3D-footprint 20231221)

			
Names: Trans-acting T-cell-specific transcription factor GATA-3
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the full DNA binding domain of GATA3-complex 2
Length: 11
Consensus: aTCAntGATAA
Weblogo: 
PSSM: P0      A      C      G      T
01     64     14     12      6      a
02      6      6     12     72      T
03      0     96      0      0      C
04     96      0      0      0      A
05     24     24     24     24      n
06     19      7      6     64      t
07      0      0     96      0      G
08     83      1      6      6      A
09      0      0      0     96      T
10     96      0      0      0      A
11     96      0      0      0      A
Binding TFs: 4hc7_B (GATA zinc finger)
Binding Sites: 4hc7_Y
4hc7_Z
			
Publications: Chen Y, Bates D.L, Dey R, Chen P.H, Machado A.C, Laird-Offringa I.A, Rohs R, Chen L. DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation. Cell reports 2:1197-206 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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