DNA Binding Motif

						

			
Accessions: GCM2_TBX21_2 (HumanTF2 1.0)

			
Names: GCM2_TBX21
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 17
Consensus: ATGmGGGCTAGGTGtGA
Weblogo: 
PSSM: P0      A      C      G      T
01   3703     87      5    113      A
02      0     59    107   3754      T
03    104      0   3195    611      G
04   1748   3908    572    446      m
05    120    398   3908     93      G
06      0     90   3908    274      G
07     40      0   3908    220      G
08    158   2794    132    825      C
09    105    837    148   2818      T
10   3536      0    224    151      A
11    642    273   3908    485      G
12    447    232   3908    180      G
13    424    252    800   3908      T
14    487    153   3908     65      G
15    721   1147    243   3908      t
16    754    157   2856    141      G
17   3537    100    154    116      A
Type: Heterodimer
Binding TFs: GCM2_TF1 (GCM motif protein)
TBX21_TF2 (T-box)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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