DNA Binding Motif

Accessions: UP00055A_2 (UniPROBE 20160601)
Names: 1700058O05Rik, BE629963, C330012F01Rik, C86454, Hbp1, high mobility group box transcription factor 1, HMG box transcription factor 1, HMG box-containing protein 1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: wdkyCCCATTGTvhasw
Weblogo:
PSSM: P0 A C G T
01 0.31 0.15 0.20 0.34 w
02 0.26 0.15 0.33 0.25 d
03 0.18 0.14 0.29 0.39 k
04 0.05 0.36 0.18 0.41 y
05 0.09 0.72 0.09 0.09 C
06 0.10 0.72 0.04 0.13 C
07 0.06 0.79 0.03 0.13 C
08 0.90 0.02 0.02 0.06 A
09 0.04 0.04 0.02 0.89 T
10 0.04 0.01 0.01 0.93 T
11 0.10 0.03 0.71 0.16 G
12 0.06 0.05 0.14 0.76 T
13 0.30 0.28 0.32 0.10 v
14 0.26 0.26 0.20 0.28 h
15 0.56 0.12 0.19 0.12 a
16 0.10 0.36 0.31 0.23 s
17 0.27 0.23 0.20 0.30 w
Binding TFs: UP00055A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AATGAATG
ATGAATGA
ATTCATTG
CCCATTCA
TCAATGAA
TCATTCAA
TCCATTCA
TGAATGAA
ACAATGAA
ATCAATGG
CAATGAAA
CAATGAAC
CCATTGAA
CCATTGAG
CCCATTGA
CTCAATGA
CTCATTGA
CTGAATGA
TCAATGGA
TCATTGAA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.