DNA Binding Motif

						

			
Accessions: M0418_1.02 (CISBP 1.02)

			
Names: Egr1, T049199_1.02
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 9
Consensus: atgCGkGGG
Weblogo: 
PSSM: P0      A      C      G      T
01 0.3140 0.1943 0.2470 0.2446      a
02 0.2023 0.2236 0.1370 0.4370      t
03 0.2214 0.1046 0.5900 0.0839      g
04 0.1181 0.6864 0.0280 0.1676      C
05 0.0168 0.0066 0.9644 0.0122      G
06 0.0148 0.0177 0.4790 0.4886      k
07 0.0833 0.0101 0.8827 0.0239      G
08 0.0065 0.0414 0.9366 0.0155      G
09 0.0591 0.0465 0.7340 0.1605      G
Binding TFs: T049199_1.02 (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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