DNA Binding Motif
| Accessions: | UP00086A_2 (UniPROBE 20160601) |
| Names: | C920001K05Rik, interferon regulatory factor 3, IRF-3, Irf3, MGC91046 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | ggagAAwGGwscra |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.15 0.41 0.20 g 02 0.20 0.14 0.44 0.23 g 03 0.60 0.09 0.12 0.19 a 04 0.21 0.06 0.65 0.08 g 05 0.75 0.03 0.05 0.18 A 06 0.77 0.05 0.04 0.14 A 07 0.48 0.09 0.18 0.26 w 08 0.06 0.11 0.75 0.07 G 09 0.06 0.07 0.82 0.05 G 10 0.27 0.09 0.22 0.42 w 11 0.06 0.38 0.42 0.13 s 12 0.05 0.60 0.17 0.19 c 13 0.27 0.15 0.38 0.20 r 14 0.38 0.20 0.22 0.20 a |
| Binding TFs: | UP00086A (Interferon regulatory factor transcription factor) |
| Binding Sites: | AAAGGAAA AAGGAAAC ACCGAAAC AGAAAGGA AGGAAACT AGTTTCCA AGTTTCGA ATCGAAAC ATGGAAAC CAGTTTCC CGAAACCG CGGTTTCC GAAACCAA GGAAACTA GGTTTCCA GTTTCCAA GTTTCGAA GTTTCGGA TTTCCAAA TTTCGAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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