DNA Binding Motif

						

			
Accessions: MA1892.1 (JASPAR 2024)

			
Names: Klf5-like
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: cccssccACGCCChmmcccc
Weblogo: 
PSSM: P0      A      C      G      T
01    174    463    219    144      c
02    197    426    206    171      c
03    203    391    213    193      c
04    231    305    260    204      s
05    247    275    317    161      s
06    206    508    122    164      c
07    164    589     82    166      c
08    774    131     62     33      A
09     17    956     11     17      C
10    205     44    698     53      G
11     12    968     10     10      C
12     23    949     18     10      C
13     18    898     11     74      C
14    311    298    119    273      h
15    269    288    195    248      m
16    251    329    210    210      m
17    209    395    212    184      c
18    214    409    217    161      c
19    207    436    199    158      c
20    219    404    217    160      c
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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