DNA Binding Motif

						

			
Accessions: 1zgw_A (3D-footprint 20231221)

			
Names: Ada polyprotein
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NMR structure of E. Coli Ada protein in complex with DNA
Length: 12
Consensus: tTGCGnntTAAT
Weblogo: 
PSSM: P0      A      C      G      T
01     16      8     16     56      t
02      0      0      0     96      T
03      0      0     96      0      G
04      0     96      0      0      C
05      0      0     96      0      G
06     24     24     24     24      n
07     24     24     24     24      n
08     16     16     16     48      t
09      8      8      8     72      T
10     96      0      0      0      A
11     96      0      0      0      A
12      0      0      0     96      T
Binding TFs: 1zgw_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Metal binding domain of Ada, Helix-turn-helix domain)
Binding Sites: 1zgw_B
1zgw_C
			
Publications: He C, Hus J.C, Sun L.J, Zhou P, Norman D.P, Dötsch V, Wei H, Gross J.D, Lane W.S, Wagner G, Verdine G.L. A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada. Molecular cell 20:117-29 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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