DNA Binding Motif

Accessions: MA1208.2 (JASPAR 2024)
Names: GT-2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: wtWTTTACygy
Weblogo:
PSSM: P0 A C G T
01 171 56 62 309 w
02 111 56 29 402 t
03 181 0 0 417 W
04 35 13 21 529 T
05 0 0 0 598 T
06 128 35 0 435 T
07 598 0 0 0 A
08 0 593 0 5 C
09 40 378 4 176 y
10 136 36 295 131 g
11 33 186 25 354 y
Type: Heterodimer
Binding TFs: Q39117 (Myb/SANT-like DNA-binding domain, Myb/SANT-like DNA-binding domain)
Q39117
Binding Sites: MA1208.2.1
MA1208.2.10
MA1208.2.11 / MA1208.2.3
MA1208.2.12
MA1208.2.13 / MA1208.2.19 / MA1208.2.7
MA1208.2.14
MA1208.2.15
MA1208.2.16
MA1208.2.17
MA1208.2.18
MA1208.2.2
MA1208.2.20
MA1208.2.4
MA1208.2.5
MA1208.2.6
MA1208.2.8
MA1208.2.9
Publications: Marechal E., Hiratsuka K., Delgado J., Nairn A., Qin J., Chait B. T., Chua N. H. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40:373-386 (1999). [Pubmed]

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