DNA Binding Motif

						

			
Accessions: 6cg0_CN (3D-footprint 20231221)

			
Names: High mobility group protein B1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Cryo-EM structure of mouse RAG1/2 HFC complex (3.17 A)
Length: 29
Consensus: ACnnnnnnnnnnnncAAGTnnnnannnAG
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0     96      0      0      C
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15     12     60     12     12      c
16     84      0     12      0      A
17     96      0      0      0      A
18      0      0     96      0      G
19      0      0      0     96      T
20     24     24     24     24      n
21     24     24     24     24      n
22     24     24     24     24      n
23     24     24     24     24      n
24     60     12     12     12      a
25     24     24     24     24      n
26     24     24     24     24      n
27     24     24     24     24      n
28     96      0      0      0      A
29      0      0     96      0      G
Binding TFs: 6cg0_N (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 6cg0_G
6cg0_M
			
Publications: Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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