DNA Binding Motif

						

			
Accessions: 6y37_A (3D-footprint 20231221)

			
Names: HapB
Organisms: Emericella nidulans, Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CCAAT-binding complex from Aspergillus nidulans with cccA DNA
Length: 12
Consensus: CCAATCAnnnCG
Weblogo: 
PSSM: P0      A      C      G      T
01      6     78      6      6      C
02      0     96      0      0      C
03     96      0      0      0      A
04     90      6      0      0      A
05      6     12     12     66      T
06      6     90      0      0      C
07     66     12     12      6      A
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0     96      0      0      C
12      6      6     84      0      G
Binding TFs: 6y37_A (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
Binding Sites: 6y37_D
6y37_E
			
Publications: Hortschansky P, Misslinger M, Mörl J, Gsaller F, Bromley MJ, Brakhage AA, Groll M, Haas H, Huber EM. Structural basis of HapE(P88L)-linked antifungal triazole resistance in Aspergillus fumigatus. Life Sci Alliance : (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.