DNA Binding Motif

						

			
Accessions: 5d5x_BE (3D-footprint 20231221)

			
Names: Putative transcription factor
Organisms: Chaetomium thermophilum, strain DSM 1495 / CBS 144.50 / IMI 039719
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
Length: 7
Consensus: CCcAGCm
Weblogo: 
PSSM: P0      A      C      G      T
01      8     85      2      1      C
02      1     89      4      2      C
03     13     57     17      9      c
04     68      6     17      5      A
05      2      2     90      2      G
06      9     80      3      4      C
07     39     29     13     15      m
Type: Heterodimer
Binding TFs: 5d5x_B (HSF-type DNA-binding)
5d5x_E (HSF-type DNA-binding)
Binding Sites: 5d5x_A
5d5x_D
			
Publications: Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A. Structure of human heat-shock transcription factor 1 in complex with DNA. Nat Struct Mol Biol 23:140-6 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.