DNA Binding Motif

						

			
Accessions: 1nvp_AC (3D-footprint 20231221)

			
Names: TATA box binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HUMAN TFIIA/TBP/DNA COMPLEX
Length: 12
Consensus: CTTTTATAnnCC
Weblogo: 
PSSM: P0      A      C      G      T
01      3     79     11      3      C
02      0      0      0     96      T
03      6     11      3     76      T
04      6      3      3     84      T
05      0      0      0     96      T
06     84      3      3      6      A
07      0      0      0     96      T
08     84      3      6      3      A
09     24     24     24     24      n
10     24     24     24     24      n
11      3     84      3      6      C
12     11     76      3      6      C
Binding TFs: 1nvp_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1nvp_E
1nvp_F
			
Publications: Bleichenbacher M, Tan S, Richmond T.J. Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. Journal of molecular biology 332:783-93 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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