DNA Binding Motif
| Accessions: | 2r5z_B (3D-footprint 20231221) |
| Names: | Homeobox protein extradenticle |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene |
| Length: | 4 |
| Consensus: | aGAt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 57 13 13 13 a 02 0 0 96 0 G 03 96 0 0 0 A 04 16 13 13 54 t |
| Binding TFs: | 2r5z_B (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | 2r5z_C 2r5z_D |
| Publications: | Joshi R, Passner J.M, Rohs R, Jain R, Sosinsky A, Crickmore M.A, Jacob V, Aggarwal A.K, Honig B, Mann R.S. Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell 131:530-43 (2007). [Pubmed] |
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