DNA Binding Motif

						

			
Accessions: MA1250.2 (JASPAR 2024)

			
Names: DREB2D
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: ccrcckCCRCCGcC
Weblogo: 
PSSM: P0      A      C      G      T
01     59    334     55    109      c
02     93    340     34     90      c
03    205     73    150    129      r
04     50    340     53    114      c
05     74    360     30     93      c
06    118     13    205    221      k
07     19    489     18     31      C
08      6    551      0      0      C
09    396      0    160      1      R
10      0    554      1      2      C
11      1    556      0      0      C
12     32      0    519      6      G
13     74    366     10    107      c
14     21    395      8    133      C
Type: Heterodimer
Binding TFs: Q9LQZ2 (AP2 domain)
Q9LQZ2
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.