DNA Binding Motif

						

			
Accessions: 1qp9_AB (3D-footprint 20231221)

			
Names: CYP1(HAP1-PC7) ACTIVATORY PROTEIN
Organisms: Saccharomyces cerevisiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7
Length: 18
Consensus: CGCnnnTATCGCnnnTAG
Weblogo: 
PSSM: P0      A      C      G      T
01      1     90      5      0      C
02      5      5     85      1      G
03     10     74      2     10      C
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07      0      0      0     96      T
08     96      0      0      0      A
09      0      0      0     96      T
10      5     86      5      0      C
11      0      0     96      0      G
12      5     69     17      5      C
13     24     24     24     24      n
14     24     24     24     24      n
15     24     24     24     24      n
16      5      5      0     86      T
17     80      5     10      1      A
18      0      5     90      1      G
Type: Heterodimer
Binding TFs: 1qp9_A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
1qp9_B (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: 1qp9_E
1qp9_F
			
Publications: Lukens A.K, King D.A, Marmorstein R. Structure of HAP1-PC7 bound to DNA: implications for DNA recognition and allosteric effects of DNA-binding on transcriptional activation. Nucleic acids research 28:3853-63 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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