DNA Binding Motif

						

			
Accessions: SRF_HUMAN.H10MO.A|M01535 (HOCOMOCO 10)

			
Names: SRF
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Responders to external signals (SRF/RLM1){5.1.2}; SRF{5.1.2.0.1}
Length: 18
Consensus: atTbkCCTtmYwtGGccw
Weblogo: 
PSSM: P0      A      C      G      T
01    199    101     88     94      a
02     89     97     86    210      t
03     57     81     11    333      T
04     20    133    129    200      b
05     65     87    134    196      k
06      6    444      4     28      C
07      1    434      5     42      C
08     89     46      5    342      T
09     41     13    101    327      t
10    232    127     22    101      m
11     10    127      4    341      Y
12    184     24     15    259      w
13     36    101     23    322      t
14    103      1    350     28      G
15     14     10    439     19      G
16     66    218    107     91      c
17     55    301     52     74      c
18    174     61     42    205      w
Binding TFs: SRF_HUMAN (SRF-type transcription factor (DNA-binding and dimerisation domain))
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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