DNA Binding Motif

						

			
Accessions: LHX6_5 (HT-SELEX2 May2017)

			
Names: LHX6
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 12
Consensus: TrATTGCAATyA
Weblogo: 
PSSM: P0      A      C      G      T
01     95     79     37   2040      T
02   1062     17    979     10      r
03   2040     31     42      4      A
04     20     48     27   2040      T
05     25     38     50   2040      T
06    221     15   2040      0      G
07      0   2040      9    218      C
08   2040     35     40     13      A
09   2040     60     40     20      A
10     10     19     14   2040      T
11     33    927     10   1114      y
12   2040     14     77     68      A
Binding TFs: LHX6 (Homeobox domain, LIM domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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