DNA Binding Motif
| Accessions: | MA1686.1 (JASPAR 2024) |
| Names: | ARF13 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 14 |
| Consensus: | ArCGGGGGACAyGT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 5788 794 652 1172 A 02 3446 543 4009 408 r 03 569 6725 463 649 C 04 576 145 7420 265 G 05 328 29 8001 48 G 06 55 55 8271 25 G 07 268 67 8022 49 G 08 118 86 8175 27 G 09 7344 111 943 8 A 10 36 8284 55 31 C 11 7953 33 393 27 A 12 749 4283 214 3160 y 13 532 518 6710 646 G 14 745 516 875 6270 T |
| Type: | Heterodimer |
| Binding TFs: | D9HNU0 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNU0 |
| Binding Sites: | MA1686.1.1 / MA1686.1.2 MA1686.1.10 MA1686.1.11 / MA1686.1.3 MA1686.1.12 / MA1686.1.16 / MA1686.1.17 / MA1686.1.7 MA1686.1.13 MA1686.1.13 / MA1686.1.14 / MA1686.1.18 / MA1686.1.19 / MA1686.1.8 MA1686.1.14 / MA1686.1.15 MA1686.1.15 / MA1686.1.16 MA1686.1.17 / MA1686.1.18 MA1686.1.19 / MA1686.1.20 MA1686.1.4 MA1686.1.5 MA1686.1.6 MA1686.1.9 MA1686.1.20 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.