DNA Binding Motif

						

			
Accessions: 4pu3_C (3D-footprint 20231221)

			
Names: Toxin-antitoxin system antidote transcriptional repressor Xre family
Organisms: Shewanella oneidensis, strain MR-1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its operator DNA complex (space group P212121)
Length: 5
Consensus: AncCt
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     24     24     24     24      n
03     13     54     16     13      c
04      0     96      0      0      C
05     16     13     13     54      t
Binding TFs: 4pu3_C (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4pu3_P
4pu3_Q
			
Publications: Wen Y, Behiels E, Felix J, Elegheert J, Vergauwen B, Devreese B, Savvides S.N. The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic acids research 42:10134-47 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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