DNA Binding Motif

						

			
Accessions: UP00018A_1 (UniPROBE 20160601)

			
Names: AI385587, interferon regulatory factor 4, IRF-4, Irf4, LSIRF, Lymphocyte-specific interferon regulatory factor, NF-EM5, PU.1 interaction partner, Spip, Transcriptional activator PIP
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 15
Consensus: mrwayCGAAACyrma
Weblogo: 
PSSM: P0      A      C      G      T
01   0.30   0.39   0.16   0.14      m
02   0.26   0.11   0.47   0.16      r
03   0.31   0.08   0.17   0.44      w
04   0.66   0.04   0.05   0.24      a
05   0.18   0.28   0.07   0.47      y
06   0.01   0.89   0.01   0.09      C
07   0.01      0   0.98      0      G
08   0.99   0.01   0.01      0      A
09   0.93      0      0   0.06      A
10   0.99      0      0   0.01      A
11   0.02   0.95   0.03   0.01      C
12   0.03   0.57   0.02   0.38      y
13   0.40   0.13   0.32   0.15      r
14   0.33   0.28   0.20   0.20      m
15   0.51   0.14   0.17   0.19      a
Binding TFs: UP00018A (Interferon regulatory factor transcription factor)
Binding Sites: AACGAAAC
AAGTTTCG
ACCGAAAC
ACGAAACC
AGTTTCGA
AGTTTCGC
AGTTTCGG
ATCGAAAC
CAGTTTCG
CCGAAACC
CGAAACCA
CGAAACCC
CGAAACCG
CGAAACTA
CGAAACTC
GGTTTCGA
GTTTCGAA
GTTTCGGA
TAGTTTCA
TTTCGAAA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.