DNA Binding Motif
| Accessions: | 1zrd_B (3D-footprint 20231221) |
| Names: | Catabolite gene activator |
| Organisms: | Escherichia coli, strain K12 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | 4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNA |
| Length: | 5 |
| Consensus: | TgaGA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 96 T 02 12 12 60 12 g 03 60 12 12 12 a 04 0 0 84 12 G 05 96 0 0 0 A |
| Binding TFs: | 1zrd_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain) |
| Binding Sites: | 1zrd_Y 1zrd_Z |
| Publications: | Napoli A.A, Lawson C.L, Ebright R.H, Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. Journal of molecular biology 357:173-83 (2006). [Pubmed] |
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