DNA Binding Motif

						

			
Accessions: UN0481.1 (JASPAR 2024)

			
Names: ZF-C2H2-7
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: gwywdaCATTgAAGTCmywycy
Weblogo: 
PSSM: P0      A      C      G      T
01    152    132    558    157      g
02    264    230    231    274      w
03    142    407     95    356      y
04    338     95    221    345      w
05    281     62    376    281      d
06    388    232    135    244      a
07     68    856     42     33      C
08    743    144     83     29      A
09     28     80     18    873      T
10      9    104     13    874      T
11    187    131    578    104      g
12    789     56    132     23      A
13    879     61     28     32      A
14     17      8    947     29      G
15     15     19     42    924      T
16     52    807     72     69      C
17    394    307    157    143      m
18    186    340    130    343      y
19    275    213    152    361      w
20    220    295    199    286      y
21    244    375    182    199      c
22    216    314    209    261      y
Type: Heterodimer
Binding TFs: Q4H2H0 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q4H2H0
			
	
			


			

				

				
				
				
				

			

			

		

	
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