DNA Binding Motif

Accessions: M0035 (AthalianaCistrome v4_May2016)
Names: AT1G28160.ampDAP, T06007;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 14
Consensus: cryCkCCGCCGyCr
Weblogo:
PSSM: P0 A C G T
01 107 324 48 113 c
02 177 50 234 131 r
03 62 306 71 153 y
04 46 465 7 74 C
05 91 4 327 170 k
06 14 447 105 26 C
07 11 581 0 0 C
08 27 0 550 15 G
09 0 592 0 0 C
10 2 590 0 0 C
11 7 0 585 0 G
12 6 381 6 199 y
13 64 428 16 84 C
14 255 0 243 94 r
Binding TFs: T06007 (AP2 domain)
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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