DNA Binding Motif

						

			
Accessions: EEAD0165 (EEADannot 2025-01-07)

			
Names: ChFLCmeme
Organisms: Crucihimalaya himalaica
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 15
Consensus: tMyaaAAWWrGAAAg
Weblogo: 
PSSM: P0      A      C      G      T
01  0.239  0.080  0.182  0.500      t
02  0.261  0.727  0.000  0.011      M
03  0.000  0.636  0.000  0.364      y
04  0.591  0.148  0.170  0.091      a
05  0.580  0.080  0.182  0.159      a
06  0.898  0.000  0.011  0.091      A
07  0.761  0.000  0.011  0.227      A
08  0.727  0.000  0.000  0.273      W
09  0.261  0.000  0.023  0.716      W
10  0.568  0.000  0.432  0.000      r
11  0.000  0.000  1.000  0.000      G
12  0.795  0.000  0.000  0.205      A
13  0.989  0.000  0.000  0.011      A
14  0.943  0.000  0.023  0.034      A
15  0.170  0.239  0.466  0.125      g
Binding TFs: ChFLC (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
			
Publications: Zhai D, Zhang LY, Li LZ, Xu ZG, Liu XL, Shang GD, Zhao B, Gao J, Wang FX, Wang JW. Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae. Cell 187:3319-3337 (2024). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.