DNA Binding Motif
| Accessions: | UP00011A_2 (UniPROBE 20160601) |
| Names: | AI876454, E230028I05Rik, interferon regulatory factor 6, Irf6, mirf6 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | mbywcTCyCGgkcrs |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.33 0.26 0.23 0.19 m 02 0.15 0.32 0.27 0.27 b 03 0.14 0.40 0.21 0.26 y 04 0.53 0.12 0.08 0.26 w 05 0.20 0.59 0.09 0.12 c 06 0.03 0.02 0.07 0.88 T 07 0.02 0.89 0.05 0.04 C 08 0.04 0.30 0.09 0.58 y 09 0.02 0.92 0.02 0.04 C 10 0.12 0.06 0.72 0.11 G 11 0.21 0.11 0.61 0.07 g 12 0.11 0.08 0.27 0.53 k 13 0.23 0.39 0.15 0.23 c 14 0.33 0.14 0.31 0.22 r 15 0.22 0.31 0.28 0.19 s |
| Binding TFs: | UP00011A (Interferon regulatory factor transcription factor) |
| Binding Sites: | AACGAAAC ACCGAAAC ACCGATAC ACGAAACC AGTATCGG AGTTTCGA AGTTTCGG ATCGAAAC ATCGATAC CAGTTTCG CCGAAACC CCGATACC CGAAACCA CGAAACCG CGAAACTA CGAAACTC CGATACCA CGATACTA GGTATCGA GGTTTCGA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.