DNA Binding Motif

						

			
Accessions: MA1660.2 (JASPAR 2024)

			
Names: NAC013
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: TTaCTTGttctcCAAGtAA
Weblogo: 
PSSM: P0      A      C      G      T
01    101     22     24   1049      T
02    195     29    128    844      T
03    631    144    182    239      a
04     16   1172      0      8      C
05      2      9     81   1104      T
06      1      2      0   1193      T
07     41    131    964     60      G
08    134    180    101    781      t
09    164    164    224    644      t
10    207    558    198    233      c
11    240    293    138    525      t
12    295    529    197    175      c
13     23   1125     28     20      C
14   1195      0      0      1      A
15   1094     98      1      3      A
16      9      0   1181      6      G
17    250    148    120    678      t
18    875    108     15    198      A
19   1016     19     16    145      A
Type: Heterodimer
Binding TFs: F4IED2 (No apical meristem (NAM) protein)
F4IED2
Binding Sites: MA1660.2.1
MA1660.2.10
MA1660.2.11
MA1660.2.12
MA1660.2.13
MA1660.2.14
MA1660.2.15
MA1660.2.16
MA1660.2.17
MA1660.2.18
MA1660.2.19
MA1660.2.2
MA1660.2.20
MA1660.2.3
MA1660.2.4
MA1660.2.5
MA1660.2.6
MA1660.2.7
MA1660.2.8
MA1660.2.9
			
Publications: De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F. The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell 25:3472-90 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.