DNA Binding Motif
| Accessions: | MA0509.3 (JASPAR 2024) |
| Names: | RFX1 |
| Organisms: | Homo sapiens, Saccharomyces cerevisiae |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 16 |
| Consensus: | sGTTGCCATGGyAACs |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1186 8736 6799 2641 s 02 18 1 15535 0 G 03 0 6 3 15535 T 04 31 719 3 15535 T 05 3217 60 12318 559 G 06 1 12767 37 2768 C 07 1 14060 1 1475 C 08 15535 3 24 10 A 09 9 20 5 15535 T 10 1408 2 14127 1 G 11 2615 33 12920 1 G 12 535 10692 68 4843 y 13 13432 1 694 2103 A 14 15535 4 6 2 A 15 0 15535 0 18 C 16 2565 6622 8913 1238 s |
| Type: | Heterodimer |
| Binding TFs: | P48743 (RFX DNA-binding domain) P48743 |
| Binding Sites: | MA0509.3.3 MA0509.3.4 MA0509.3.5 MA0509.3.6 MA0509.3.7 MA0509.3.1 / MA0509.3.2 MA0509.3.19 MA0509.3.10 / MA0509.3.9 MA0509.3.12 MA0509.3.13 MA0509.3.14 MA0509.3.11 MA0509.3.15 MA0509.3.16 MA0509.3.17 MA0509.3.18 MA0509.3.20 MA0509.3.8 |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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