DNA Binding Motif

						

			
Accessions: 1qrv_AB (3D-footprint 20231221)

			
Names: HIGH MOBILITY GROUP PROTEIN D
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Length: 6
Consensus: tATcnC
Weblogo: 
PSSM: P0      A      C      G      T
01     13     13      5     65      t
02     71      0      2     23      A
03      9      5      3     79      T
04     20     43     18     15      c
05     24     24     24     24      n
06      3     86      3      4      C
Type: Heterodimer
Binding TFs: 1qrv_A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
1qrv_B (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 1qrv_C
1qrv_D
			
Publications: Murphy F.V, Sweet R.M, Churchill M.E. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. The EMBO journal 18:6610-8 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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