DNA Binding Motif

						

			
Accessions: UN0805.1 (JASPAR 2024)

			
Names: NANOG
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 18
Consensus: atTccATTCCATTCcATT
Weblogo: 
PSSM: P0      A      C      G      T
01    793    125    121    171      a
02    113     90    223    784      t
03    188     64     63    895      T
04    123    727     95    265      c
05     96    737    285     92      c
06   1129     22     22     37      A
07     19     28     37   1126      T
08     12      8     12   1178      T
09     30   1096     35     49      C
10     38    924    204     44      C
11   1124     24     25     37      A
12     27     49     41   1093      T
13     35     18     76   1081      T
14    118    878     84    130      C
15    123    635    282    170      c
16    855     67    146    142      A
17    115    139    121    835      T
18     86     89    164    871      T
Binding TFs: Q9H9S0
Binding Sites: UN0805.1.1
UN0805.1.10
UN0805.1.11
UN0805.1.12
UN0805.1.13
UN0805.1.14
UN0805.1.15
UN0805.1.16
UN0805.1.17
UN0805.1.18
UN0805.1.19
UN0805.1.2
UN0805.1.20
UN0805.1.3
UN0805.1.4
UN0805.1.5
UN0805.1.6
UN0805.1.7
UN0805.1.8
UN0805.1.9
			
	
			


			

				

				
				
				
				

			

			

		

	
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