DNA Binding Motif

						

			
Accessions: MA1677.2 (JASPAR 2024)

			
Names: NAC078
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 7
Consensus: CAAGAAA
Weblogo: 
PSSM: P0      A      C      G      T
01      9   5734      9     84      C
02   5690     18     58     70      A
03   5496    255     22     63      A
04      1      9   5745     81      G
05   4732    228    142    734      A
06   5341     98     35    362      A
07   5581     49     57    149      A
Type: Heterodimer
Binding TFs: Q84K00 (No apical meristem (NAM) protein)
Q84K00
Binding Sites: MA1677.2.11 / MA1677.2.19
MA1677.2.13 / MA1677.2.14 / MA1677.2.4 / MA1677.2.8
MA1677.2.17 / MA1677.2.2
MA1677.2.1 / MA1677.2.12 / MA1677.2.15 / MA1677.2.16 / MA1677.2.18 / MA1677.2.20 / MA1677.2.3 / MA1677.2.5 / MA1677.2.6 / MA1677.2.9
MA1677.2.10
MA1677.2.7
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.