DNA Binding Motif

						

			
Accessions: UP00534B_3 (UniPROBE 20160601)

			
Names: CG1832, Chromatin-linked adaptor for MSL proteins, CLAMP_Cterm4Zn, DMEL\CG1832
Organisms: Drosophila melanogaster
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: tgkgwmrCTCTTCTAmyrssyb
Weblogo: 
PSSM: P0      A      C      G      T
01   0.12   0.12   0.24   0.52      t
02   0.24   0.15   0.42   0.19      g
03   0.19   0.16   0.36   0.29      k
04   0.21   0.23   0.32   0.24      g
05   0.30   0.23   0.21   0.26      w
06   0.31   0.41   0.05   0.23      m
07   0.61   0.08   0.26   0.05      r
08      0   0.97      0   0.02      C
09      0   0.02   0.01   0.97      T
10   0.01   0.94   0.03   0.02      C
11   0.01   0.08   0.01   0.90      T
12      0   0.01   0.01   0.98      T
13   0.01   0.94      0   0.05      C
14   0.01   0.02   0.01   0.95      T
15   0.86   0.04   0.04   0.06      A
16   0.41   0.31   0.07   0.22      m
17   0.07   0.33   0.07   0.54      y
18   0.40   0.13   0.30   0.16      r
19   0.16   0.36   0.36   0.12      s
20   0.07   0.36   0.38   0.18      s
21   0.20   0.25   0.21   0.33      y
22   0.06   0.33   0.29   0.32      b
Binding TFs: UP00534B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: AAAAGAGA
ACTCTTCT
AGAAAGAG
AGAAGAGC
AGAGCAGG
AGAGTGAG
CACTCTTC
CTCTTCTA
CTCTTCTC
CTCTTTCC
CTCTTTTC
CTGCTCTA
GAAAGAGA
GAAGAGTA
GACAAGGA
GACAGAGA
GAGAGAGA
GAGCGAGA
GAGGGAGA
GAGTGAGA
			
Publications: Soruco MM, Chery J, Bishop EP, Siggers T, Tolstorukov MY, Leydon AR, Sugden AU, Goebel K, Feng J, Xia P, Vedenko A, Bulyk ML, Park PJ, Larschan E. The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation. Genes Dev 27:1551-6 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.