DNA Binding Motif

						

			
Accessions: UP00528A_2 (UniPROBE 20160601)

			
Names: Forkhead homolog 16, Foxm1, Winged-helix transcription factor Trident
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: wrarcaymAwAACAAmwmhhmm
Weblogo: 
PSSM: P0      A      C      G      T
01   0.34   0.10   0.13   0.43      w
02   0.39   0.13   0.28   0.21      r
03   0.54   0.20   0.12   0.14      a
04   0.27   0.24   0.33   0.16      r
05   0.23   0.40   0.23   0.14      c
06   0.59   0.14   0.18   0.09      a
07   0.12   0.35   0.17   0.35      y
08   0.42   0.56   0.02   0.01      m
09   0.96      0   0.03   0.01      A
10   0.54   0.03      0   0.43      w
11   0.92   0.05      0   0.03      A
12   0.97   0.01   0.01   0.01      A
13   0.01   0.95   0.01   0.03      C
14   0.97   0.01   0.01   0.01      A
15   0.80   0.07   0.03   0.10      A
16   0.29   0.47   0.06   0.18      m
17   0.42   0.15   0.10   0.33      w
18   0.34   0.33   0.17   0.16      m
19   0.25   0.31   0.09   0.35      h
20   0.28   0.27   0.20   0.26      h
21   0.25   0.33   0.19   0.23      m
22   0.27   0.37   0.12   0.24      m
Binding TFs: UP00528A (Fork head domain)
Binding Sites: AACAATGC
AGATGCAT
ATGCATCA
GATGCATC
AAAATGCA
AAGATGCA
AATGCATC
AGAATGCA
AGGATGCA
AGTGCATC
ATGATGCA
ATGCATCC
ATGCATTC
CAGGATGC
CATAACAA
GATGCACA
GCATCATA
GGATGCAC
GGGATGCA
GTGATGCA
			
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.