DNA Binding Motif

						

			
Accessions: UN0477.1 (JASPAR 2024)

			
Names: ZF-C2H2-10
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: mmhmmmcATAGAaAtmmyatwh
Weblogo: 
PSSM: P0      A      C      G      T
01    263    285    229    223      m
02    317    254    237    193      m
03    304    254    176    266      h
04    252    274    243    231      m
05    289    307    239    166      m
06    283    346    177    194      m
07    181    598     73    148      c
08    951     11     24     14      A
09     22     58     25    895      T
10    849     55     63     33      A
11    100     39    822     38      G
12    932     20     22     26      A
13    618    121    138    123      a
14    856     28     62     53      A
15     84    216     41    660      t
16    303    486     96    116      m
17    326    279    157    238      m
18    187    341    107    366      y
19    632    149     91    128      a
20    192    129    118    561      t
21    394    136    152    318      w
22    294    261    158    287      h
Type: Heterodimer
Binding TFs: Q4H2K8 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q4H2K8
			
	
			


			

				

				
				
				
				

			

			

		

	
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