DNA Binding Motif

						

			
Accessions: 3g99_AB (3D-footprint 20231221)

			
Names: Glucocorticoid receptor
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: GR DNA binding domain:Pal complex-9
Length: 11
Consensus: aCakkdtGtkc
Weblogo: 
PSSM: P0      A      C      G      T
01     63     13     10     10      a
02      3     85      5      3      C
03     56     15     14     11      a
04     23     22     24     27      k
05     23     20     25     28      k
06     26     21     24     25      d
07     11     13     16     56      t
08      5      4     84      3      G
09     18     18     22     38      t
10     23     23     25     25      k
11     10     58     11     17      c
Type: Heterodimer
Binding TFs: 3g99_A (Zinc finger, C4 type (two domains))
3g99_B (Zinc finger, C4 type (two domains))
Binding Sites: 3g99_C
3g99_D
			
Publications: Meijsing S.H, Pufall M.A, So A.Y, Bates D.L, Chen L, Yamamoto K.R. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science (New York, N.Y.) 324:407-10 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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