DNA Binding Motif

						

			
Accessions: MA1874.1 (JASPAR 2024)

			
Names: GATA-a
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwrctGATAAsrwawhh
Weblogo: 
PSSM: P0      A      C      G      T
01    267    227    242    264      w
02    273    234    231    263      w
03    269    234    235    263      w
04    262    231    240    268      w
05    276    227    234    263      w
06    285    216    252    248      r
07    235    307    246    213      c
08    229    150     35    585      t
09     14     13    963     10      G
10    972      8      8     11      A
11      5      9      4    982      T
12    911      6     11     72      A
13    815     50     64     70      A
14    164    292    344    200      s
15    297    244    295    164      r
16    260    242    244    254      w
17    272    248    236    244      a
18    266    242    234    258      w
19    261    257    220    261      h
20    254    256    223    266      h
Type: Heterodimer
Binding TFs: Q4H3F6 (GATA zinc finger)
Q4H3F6
			
Publications: Ragkousi K, Beh J, Sweeney S, Starobinska E, Davidson B. A single GATA factor plays discrete, lineage specific roles in ascidian heart development. Dev Biol 352:154-63 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.