DNA Binding Motif

						

			
Accessions: 1gxp_EF (3D-footprint 20231221)

			
Names: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PhoB effector domain in complex with pho box DNA.
Length: 18
Consensus: CnnGACAnCTTTnTGACA
Weblogo: 
PSSM: P0      A      C      G      T
01      8     72      8      8      C
02     24     24     24     24      n
03     24     24     24     24      n
04      0      0     96      0      G
05     96      0      0      0      A
06      0     96      0      0      C
07     96      0      0      0      A
08     24     24     24     24      n
09      8     68      8     12      C
10      4      4      4     84      T
11      4      0      4     88      T
12      0      0      0     96      T
13     24     24     24     24      n
14      4      4      0     88      T
15      8      8     72      8      G
16     96      0      0      0      A
17      0     96      0      0      C
18     84      4      4      4      A
Binding TFs: 1gxp_E / 1gxp_F (Transcriptional regulatory protein, C terminal)
Binding Sites: 1gxp_G
1gxp_H
			
Publications: Blanco AG., Sola M., Gomis-Ruth FX., Coll M. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure. 10(5):701-13 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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