DNA Binding Motif

						

			
Accessions: UP00609F_1 (UniPROBE 20160601)

			
Names: CDHS, HuP2, MGC120381, MGC120382, MGC120383, MGC120384, MGC134778, paired box protein Pax-3, PAX3_R270C_R1, WS1, WS3
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: wwkykktAyawyayAtarrgkkc
Weblogo: 
PSSM: P0      A      C      G      T
01   0.33   0.10   0.18   0.39      w
02   0.30   0.05   0.22   0.43      w
03   0.24   0.17   0.33   0.26      k
04   0.20   0.43   0.12   0.25      y
05   0.20   0.07   0.47   0.26      k
06   0.22   0.11   0.34   0.34      k
07   0.25   0.22   0.24   0.30      t
08   0.69   0.11   0.09   0.11      A
09   0.02   0.43   0.04   0.51      y
10   0.63   0.07   0.08   0.21      a
11   0.36   0.11   0.12   0.41      w
12   0.04   0.34   0.08   0.55      y
13   0.65   0.20   0.12   0.02      a
14   0.08   0.64   0.03   0.25      y
15   0.72   0.07   0.16   0.05      A
16   0.09   0.07   0.17   0.66      t
17   0.33   0.25   0.24   0.19      a
18   0.44   0.17   0.25   0.14      r
19   0.36   0.10   0.31   0.22      r
20   0.15   0.22   0.41   0.22      g
21   0.16   0.09   0.29   0.46      k
22   0.24   0.05   0.44   0.27      k
23   0.13   0.64   0.18   0.05      c
Binding TFs: UP00609F (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
Binding Sites: ACATGTAC
TACATGTA
TGATATCA
ACACATAC
ACAGTATA
ACATACAT
ACCATGTA
ACCGTGAC
ACTACATC
ATACATAT
ATACATGG
ATACTGTA
ATATACAC
ATCATCAT
ATTACGTG
CACATTAC
CATGTATA
CTATGTAC
TACATACA
TATGTACA
			
Publications: Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.